Contents
DDD1 - Descriptive statistics - Distribution of sample types
DDD2 - Descriptive statistics - Distribution of batches
DDD3 - Descriptive statistics - Distribution of sample type by batches
DDD4 - Descriptive statistics - CVs
EEE1 - Maternal, Study Pool, and CHEAR; All features; Pareto; Non-parametric mean only
EEE2 - Maternal, Study Pool, and CHEAR; All features; Pareto; Non-parametric mean and variance
EEE3 - Maternal, Study Pool, and CHEAR; All features; UV; Non-parametric mean only
EEE4 - Maternal, Study Pool, and CHEAR; All features; UV; Non-parametric mean and variance
EEE5 - Maternal, Study Pool, and CHEAR; CV <200%; Pareto; Non-parametric mean only
EEE6 - Maternal, Study Pool, and CHEAR; CV <200%; Pareto; Non-parametric mean and variance
EEE7 - Maternal, Study Pool, and CHEAR; CV <200%; UV; Non-parametric mean only
EEE8 - Maternal, Study Pool, and CHEAR; CV <200%; UV; Non-parametric mean and variance
EEE9 - Maternal, Study Pool, and CHEAR; CV <100%; Pareto; Non-parametric mean only
EEE10 - Maternal, Study Pool, and CHEAR; CV <100%; Pareto; Non-parametric mean and variance
EEE11 - Maternal, Study Pool, and CHEAR; CV <100%; UV; Non-parametric mean only
EEE12 - Maternal, Study Pool, and CHEAR; CV <100%; UV; Non-parametric mean and variance
EEE13 - Maternal, Study Pool, and CHEAR; CV <50%; Pareto; Non-parametric mean only
EEE14 - Maternal, Study Pool, and CHEAR; CV <50%; Pareto; Non-parametric mean and variance
EEE15 - Maternal, Study Pool, and CHEAR; CV <50%; UV; Non-parametric mean only
EEE16 - Maternal, Study Pool, and CHEAR; CV <50%; UV; Non-parametric mean and variance
DDD1 - Descriptive statistics - Distribution of sample types
FALSE
FALSE Adult Blank CHEAR Maternal Study Pool <NA>
FALSE 20 23 29 263 29 0
DDD2 - Descriptive statistics - Distribution of batches
FALSE
FALSE 1a 1b 2 3 <NA>
FALSE 95 32 155 82 0
DDD3 - Descriptive statistics - Distribution of sample type by batches
FALSE
FALSE 1a 1b 2 3 <NA>
FALSE Adult 8 0 12 0 0
FALSE Blank 0 0 15 8 0
FALSE CHEAR 8 3 12 6 0
FALSE Maternal 72 25 104 62 0
FALSE Study Pool 7 4 12 6 0
FALSE <NA> 0 0 0 0 0
DDD4 - Descriptive statistics - CVs
There are 10259 features.
3982 features have CV < 50%.
7604 features have CV < 100%.
9365 features have CV < 200%.
239 features have CV = NA, due to zero non-zero values.
134 features have CV = NA, due to one non-zero value.
EEE1 - Maternal, Study Pool, and CHEAR; All features; Pareto; Non-parametric mean only
FALSE Found 107 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE2 - Maternal, Study Pool, and CHEAR; All features; Pareto; Non-parametric mean and variance
FALSE Found 107 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE3 - Maternal, Study Pool, and CHEAR; All features; UV; Non-parametric mean only
FALSE Found 107 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE4 - Maternal, Study Pool, and CHEAR; All features; UV; Non-parametric mean and variance
FALSE Found 107 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE5 - Maternal, Study Pool, and CHEAR; CV <200%; Pareto; Non-parametric mean only
FALSE Found 81 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE6 - Maternal, Study Pool, and CHEAR; CV <200%; Pareto; Non-parametric mean and variance
FALSE Found 81 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE7 - Maternal, Study Pool, and CHEAR; CV <200%; UV; Non-parametric mean only
FALSE Found 81 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE8 - Maternal, Study Pool, and CHEAR; CV <200%; UV; Non-parametric mean and variance
FALSE Found 81 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE9 - Maternal, Study Pool, and CHEAR; CV <100%; Pareto; Non-parametric mean only
FALSE Found 33 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE10 - Maternal, Study Pool, and CHEAR; CV <100%; Pareto; Non-parametric mean and variance
FALSE Found 33 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE11 - Maternal, Study Pool, and CHEAR; CV <100%; UV; Non-parametric mean only
FALSE Found 33 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE12 - Maternal, Study Pool, and CHEAR; CV <100%; UV; Non-parametric mean and variance
FALSE Found 33 genes with uniform expression within a single batch (all zeros); these will not be adjusted for batch.
EEE13 - Maternal, Study Pool, and CHEAR; CV <50%; Pareto; Non-parametric mean only
EEE14 - Maternal, Study Pool, and CHEAR; CV <50%; Pareto; Non-parametric mean and variance
EEE15 - Maternal, Study Pool, and CHEAR; CV <50%; UV; Non-parametric mean only
EEE16 - Maternal, Study Pool, and CHEAR; CV <50%; UV; Non-parametric mean and variance